Publications

2024

de Merwe, C., Simpson, D.J., Qiao, N., Otto S.J.G., Kovacevic J., Gänzle, M.G., McMullen, L.M. (2024). Is the persistence of Listeria monocytogenes in food processing facilities and its resistance to pathogen intervention linked to its phylogeny? Applied and Environmental Microbiology 90 (6). Click here to access.

Conrad, C.C., Funk T., Andrés-Lasheras, S., Yevtushenko, C., Claassen, C., Otto, S.J.G., Waldner, C., Zaheer, R., McAllister, T. (2024). Improving the detection of integrative conjugative elements in bovine nasopharyngeal swabs using multiplex recombinase polymerase amplification. Journal of Microbiological Methods 221, 106943. Click here to access.

Poth, C.N., Wongvorachan, T. Bulut, O., Otto, S.J.G. (2024). Adaptive Case Study-Mixed Methods Design Practices for Researchers Studying Complex Phenomena. Journal of Mixed Methods Research 0 (0). Click here to access.

Herman, E. K., Lacoste, S. R., Freeman, C. N., Otto, S.J.G, McCarthy, E.L., Links, M.G., Stothard, P., Waldner, C.L. (2024). Bacterial enrichment prior to third-generation metagenomic sequencing improves detection of BRD pathogens and genetic determinants of antimicrobial resistance in feedlot cattle. Frontiers in Microbiology 15. Click here to access.

Abi Younes, J.N.; Campbell, J.R.; Otto, S.J.G.; Gow, S.P.; Woolums, A.R.; Jelinski, M.; Lacoste, S.; Waldner, C.L. (2024). Variation in pen-Level prevalence of BRD bacterial pathogens and antimicrobial resistance following feedlot arrival in beef calves. Antibiotics 13(4), 322, 13040322. Click here to access.

Adewusi O.O., Waldner C.L., Hanington P.C., Hill J.E., Freeman C.N., Otto S.J.G. (2024). Laboratory tools for the direct detection of bacterial respiratory infections and antimicrobial resistance: a scoping review. Journal of Veterinary Diagnostic Investigation. 0, 10406387241235968. Click here to access.

2023

McCubbin, K. D., de Jong, E., Smid, A. M. C., Ida, J. A., Bodaneze, J., Anholt, R. M., Larose, S., Otto, S.J.G., Barkema, H. W. (2023). Perceptions of antimicrobial stewardship: Identifying drivers and barriers across various professions in Canada utilizing a One Health approach. Frontiers in Public Health, 11, 1222149. Click here to access

Neustaedter, C. M., Robertson, K., Tschritter, D., Reid-Smith, R. J., MacKinnon, M. C., Murphy, C. P., Chapman, B., Neumann, N.F., Otto, S. J.G. (2023). A scoping review of factors associated with antimicrobial-resistant Campylobacter species infections in humans. Epidemiology & Infection, 1-43. Click here to access

Strong, K. M., Marasco, K. L., Invik, J., Ganshorn, H., Reid-Smith, R. J., Waldner, C. L., Otto, S.J.G., Kastelic, J.P., Checkley, S. L. (2023). Factors associated with antimicrobial resistant enterococci in Canadian beef cattle: A scoping review. Frontiers in Veterinary Science, 10, 1155772. Click here to access

2022

Freeman, C. N., Herman, E. K., Abi Younes, J., Ramsay, D. E., Erikson, N., Stothard, P., Links, M.G., Otto, S.J.G., & Waldner, C. (2022). Evaluating the potential of third generation metagenomic sequencing for the detection of BRD pathogens and genetic determinants of antimicrobial resistance in chronically ill feedlot cattle. BMC Veterinary Research, 18(1), 1-15. Click here to access

Yu, D., Ryu, K., Zhi, S., Otto, S. J.G., & Neumann, N. F. (2022). Naturalized Escherichia coli in Wastewater and the Co-evolution of Bacterial Resistance to Water Treatment and Antibiotics. Frontiers in Microbiology, 13, 810312. Click here to access

de Jongh, E.J., Harper, S.L., Yamamoto, S.S., Wright, C.J., Wilkinson, C.W., Ghosh, S., Otto, S.J.G. (2022). One Health, One Hive: A scoping review of honey bees, climate change, pollutants, and antimicrobial resistance. PLoS One, 17(2), e0242393. Click here to access

Otto, S.J.G., Haworth-Brockman, M., Miazga-Rodriguez, M., Wierzbowski, A., Saxinger, L.M. (2022). Integrated surveillance of antimicrobial resistance and antimicrobial use: Evaluation of the status in Canada (2014–2019). Canadian Journal of Public Health, 113(1). Click here to access

McCubbin, K.D., Barkema, H.W., Babujee, A., Forseille, J., Naum, K., Buote, P., Dalton, D., Checkley, S.L., Lehman, K., Morris, T., Smilski, K., Wilkins, W.L., Anholt, R.M., Larose, S., Saxinger, L.M., Blue, D., Otto, S.J.G. (2022). One Health and antimicrobial stewardship: Where to go from here?. Canadian Veterinary Journal, 63(2), 198-200. Click here to access

2021

McCubbin, K., Anholt, M., De Jong, E., Ida, J. A., Nobrega, D., Conly, J. M., ... Otto S.J.G., Barkema, H. W. (2021). Knowledge gaps in the understanding of antimicrobial resistance in Canada. Frontiers in Public Health, 1523. Click here to access.

Haworth-Brockman, M., Saxinger, L. M., Miazga-Rodriguez, M., Wierzbowski, A., & Otto, S.J.G. (2021). One Health Evaluation of Antimicrobial Use and Resistance Surveillance: A Novel Tool for Evaluating Integrated, One Health Antimicrobial Resistance and Antimicrobial Use Surveillance Programs. Frontiers in Public Health, 1119. Click here to access

Poth, C. N., Bulut, O., Aquilina, A. M., & Otto, S. J. G.(2021). Using Data Mining for Rapid Complex Case Study Descriptions: Example of Public Health Briefings During the Onset of the COVID-19 Pandemic. Journal of Mixed Methods Research, 15586898211013925. Click here to access

Narbonne, J. A., Radke, B. R., Price, D., Hanington, P. C., Babujee, A., & Otto, S. J. G. (2021). Antimicrobial use surveillance indicators for finfish aquaculture production: a review. Frontiers in Veterinary Science, 8, 175. Click here to access

Pinto, K. R., Chicoine, A. L., Romano, L. S., & Otto, S. J. (2021). An Internet survey of risk factors for injury in North American dogs competing in flyball. The Canadian Veterinary Journal= La Revue Veterinaire Canadienne, 62(3), 253-260. Click here to access abstract.

2020

Hannon, S. J., Brault, S. A., Otto, S. J., Morley, P. S., Mcallister, T. A., Booker, C. W., & Gow, S. P. (2020). Feedlot Cattle Antimicrobial Use Surveillance Network: A Canadian Journey. Frontiers in Veterinary Science, 7, 968. Click here to access

Otto, S. J., Levett, P. N., Reid-Smith, R. J., Pearl, D. L., Daku, D., Nagle, E., ... & McEwen, S. A. (2020). Antimicrobial Resistance of Human Campylobacter Species Infections in Saskatchewan, Canada (1999–2006): A Historical Provincial Collection of All Reported Cases. Foodborne pathogens and disease. Click here to access

Reynolds, C., Checkley, S., Chui, L., Otto, S., & Neumann, N. F. (2020). Evaluating the risks associated with Shiga-toxin-producing Escherichia coli (STEC) in private well waters in Canada. Canadian Journal of Microbiology, 66(5), 337-350. Click here to access

Zhi, S., Stothard, P., Banting, G., Scott, C., Huntley, K., Ryu, K., ... & Ruecker, N. J. (2020). Characterization of water treatment-resistant and multidrug-resistant urinary pathogenic Escherichia coli in treated wastewater. Water Research, 115827. Click here to access

2019

Brault, S. A., Hannon, S. J., Gow, S. P., Warr, B. N., Withell, J., Song, J., ... & Morley, P. S. (2019). Antimicrobial use on 36 beef feedlots in Western Canada: 2008–2012. Frontiers in veterinary science, 6, 329. Click here to access

Brault, S., Hannon, S. J., Gow, S. P., Otto, S. J. G., Booker, C. W., & Morley, P. S. (2019). Calculation of antimicrobial use indicators in beef feedlots-effects of choice of metric and standardized values. Frontiers in veterinary science, 6, 330. Click here to access

Zhi, S., Banting, G., Stothard, P., Ashbolt, N. J., Checkley, S., Meyer, K., ... Otto, S., & Neumann, N. F. (2019). Evidence for the evolution, clonal expansion and global dissemination of water treatment-resistant naturalized strains of Escherichia coli in wastewater. Water research, 156, 208-222. Click here to access